PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234779.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 391aa    MW: 42579.8 Da    PI: 4.7865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234779.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13122172255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YI++Lq
  XP_008234779.2 122 RMSHITVERNRRKQMNDHLSVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 172
                     99**************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-17119190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.078120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-14120176No hitNo description
Gene3DG3DSA:4.10.280.103.1E-13122184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-11122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-11126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAMDNDHDRP SSDFFQEHEQ CYYSDTTCNL TTPGDDLFSI LESLDDGFGF GGAMEFPPPP  60
ATVALDNEQP PRPLVFSSSS ADQTELDETN SPPKTKRLKL STSPASGGTA TTFSDEDGQQ  120
TRMSHITVER NRRKQMNDHL SVLRSLMPCF YVKRGDQASI IGGVVDYINE LQQVLQSLEA  180
KKQRKAYSEV LSSPMLASSP RPPGPSPPVL SPRKPPLSPR LSLPPISPRT PQPTSPYKPS  240
SARALQQPPP QLPAAANIIS NYLISSPNMP TSSSFELPSP SSSTTSSHVN NNNNNNNIDN  300
LNELFANSKS AVAQVEVKFS GPNVLLKTVS LPIPGQALRI ISTLEELSLE ILDVSITTVD  360
ETMINAFTIK IGIECQLSAE ELAHQIQQTF C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121132RMSHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007219087.10.0hypothetical protein PRUPE_ppa015055mg
SwissprotQ700C71e-109SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLM5X4520.0M5X452_PRUPE; Uncharacterized protein
STRINGPOPTR_0012s01370.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.19e-49bHLH family protein